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BME | EEG Analysis - Hilbert Transform
Created2023-12-04|Biomedical EngineeringEEG Analysis|Major
Hilbert Transform | Hilbert Transform Basic procedure: Start with a bandpass filter, then apply the Hilbert transform to obtain a complex signal, which separates amplitude and phase. Objective: Obtain instantaneous amplitude and phase by adding the imaginary part to the real signal. 📌 We do not alter the real part; we only add the imaginary part on top of it. Mathematical Definition Assuming we have a signal named real(t)real(t)real(t), the Hilbert transform is given by: real(t)+i∗imag(t)rea ...
BME | EEG Analysis - Wavelet Transform
Created2023-12-04|Biomedical EngineeringEEG Analysis|Major
Basic Concept: Wavelet Transform The wavelet transform uses a group of short kernels (wavelets) of different frequencies convolved with the original signal. Thus, the signal only needs to be stable over the length of the wavelet (stationary). Similar to Fourier transform, when the signal frequency matches the wavelet frequency, the dot product yields larger amplitude results. Wavelet convolution can be utilized as a band-pass filter. Convolution Kernels Types of Wavelets There are various types ...
BME | EEG Analysis - Fourier Transform
Created2023-12-04|Biomedical EngineeringEEG Analysis|Major
Fourier Transform Mathematical Definitions Discrete Fourier Transform (DFT) Definition: Fn=∑k=0N−1fke−2πink/NF_n= \sum_{k=0}^{N-1} f_k e^{-2\pi ink/N} Fn​=k=0∑N−1​fk​e−2πink/N Continuous Fourier Transform (CFT) Definition: F(v)=∫−∞+∞f(t)e−2πivtdtF(v)=\int_{-\infty}^{+\infty} f(t)e^{-2\pi ivt}dt F(v)=∫−∞+∞​f(t)e−2πivtdt Discrete Inverse Fourier Transform (IDFT) Definition: fk=1n∑n=0N−1Fne2πink/Nf_k= \frac{1}{n}\sum_{n=0}^{N-1} F_n e^{2\pi ink/N} fk​=n1​n=0∑N−1​Fn​e2πink/N Continuous Inverse Fouri ...
BME | EEG Analysis - Preprocessing
Created2023-12-03|Biomedical EngineeringEEG Analysis|Major
Organize Data Cleanse the imported data into the required structure. Select data types (such as cell types in MATLAB, multidimensional matrix types, structure types, etc., in Python including tuples, lists, dictionaries, np.array, MNE data structures, etc.) Understand the fundamental aspects of the dataset: the number of channels, patients, the stored content in each dataset, the size of the dataset, etc. Re-reference Data obtained from online sources or EEG machines are typically reference-fre ...
BME | EEG Analysis - Matlab Basics
Created2023-12-03|Biomedical EngineeringEEG Analysis|Major
Matlab Basics size(x): Dimensions of matrix x. length(x): Maximum length across all dimensions of x. zeros(1,2): Generates a matrix of zeros with 1 row and 2 columns. ones(2,3): Generates a matrix of ones with 2 rows and 3 columns. eye(2): Creates a 2x2 identity matrix with 1s on the diagonal and 0s elsewhere. round(x): Rounds x to the nearest integer. ceil(x): Rounds x up to the nearest integer. floor(x): Rounds x down to the nearest integer. repmat([1,2],2, 3): Replicates the array [1,2] into ...
BME | Anatomy - Respiratory System
Created2023-12-03|Biomedical EngineeringAnatomy|Biomedical Engineering
Respiratory System Respiration: The process of gas exchange between the body and the external environment. Respiratory Tract: Nose, Pharynx, Larynx, Trachea, Bronchi. Lungs: Site for gas exchange. External Respiration: Gas exchange between blood in the pulmonary capillaries and the external environment. Internal Respiration: Gas exchange between blood in the tissue capillaries and the tissue cells. Pulmonary Ventilation: Gas exchange between the lungs and the external environment. Pulmonary Gas ...
BME | EEG Analysis - Convolution and Dot Product
Created2023-03-13|Biomedical EngineeringEEG Analysis|Major
Dot Product Mathematical Definition Assuming two input vectors, x=[x1,x2,...,xn]x = [x_1, x_2, ..., x_n]x=[x1​,x2​,...,xn​] and y=[y1,y2,...,yn]y = [y_1, y_2, ..., y_n]y=[y1​,y2​,...,yn​], the dot product is calculated as: x⋅y=∑i=1nxiyi=x1y1+x2y2+...+xnynx \cdot y = \sum_{i=1}^n x_i y_i = x_1y_1+x_2y_2+...+x_ny_n x⋅y=i=1∑n​xi​yi​=x1​y1​+x2​y2​+...+xn​yn​ Code MATLAB Code: 12z = dot(x, y)z = x * y' Python Code 1z = np.dot(x, y) Convolution Mathematical Definitions Discrete Convolution Defini ...
BME | EEG Analysis - Introduction
Created2023-02-03|Biomedical EngineeringEEG Analysis|Major
Neural Time Series Data Types EEG (electroencephalogram) measures electrical activity through field changes. Scalp EEG: Non-invasive, resembling wearing a cap on the head. iEEG (intracranial EEG): Invasive, requires a craniotomy. Stereotactic EEG / Depth electrode: Embedded deep within brain tissue. ECoG (electrocorticogram): Surface-level measurement on the brain cortex. MEG (magnetoencephalogram): Measures magnetic field changes. fMRI/PET: Measures blood flow changes, typically using BLOD. LF ...
BME | Anatomy - Circulatory System
Created2023-01-23|Biomedical EngineeringAnatomy|Major
Fluid Distribution, Internal Environment Homeostasis, Blood Components, and Functions Fluids: Intracellular and Extracellular Internal Environment: Extracellular Fluid Blood Components: Plasma + Blood Cells (Red Blood Cells + White Blood Cells + Platelets) Functions of Blood: Transportation, Defense and Protection, Maintaining Homeostasis Blood Plasma Plasma Proteins: Albumin (maintains blood colloid osmotic pressure), Globulin, Fibrinogen (involved in clotting) Non-protein Nitrogen: Nitrogen-c ...
BME | Anatomy - Musculoskeletal System
Created2023-01-02|Biomedical EngineeringAnatomy|Biomedical Engineering
Overview of the Musculoskeletal System Components of the Musculoskeletal System: Bones, Joints, Spinal Bones Composition of the musculoskeletal system: Bones, Bone Connections, Skeletal Muscles. Functions of the skeleton: Provides basic body shape, supports body weight, protects vital organs. Number of bones: Total of 206. Classification of bones: Long bones, Short bones, Flat bones, Irregular bones. Bone structure: Periosteum (nutritional function), Bone tissue, Bone marrow. Chemical compositio ...
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